Lab
Resources
RESOURCES
Our Molecular Biology expertise can be exploited thanks to the multiple technologies that we have access to. We can also count on an High Performance Clustering (HPC) infrastructure to carry on bioinformatic analyses that have resulted in the development of several software and the generation of sequencing data that have been published during the years.
Software
Bioinformatics softwares developed at Bodega Lab and deployed on public platforms, such as GitHub, PyPI and Bioconda.
iRescue
Software for multimapping-aware quantification of transposable elements expression in single-cell RNA sequencing data.
TEcount
A package to count reads mapping on transposable elements subfamilies, families and classes in bulk NGS sequencing data.
Data
Sequencing datasets produced at Bodega Lab and released on public data repositories.
RNA-sequencing
Human primary neonatal Naive CD4+ T cells and adult Naive CD4+ T cells treated with Scr or LINE1 ASOs.
Primary Naive CD4+ T cells and Activated Naive CD4+ T cells.
ChIP-sequencing
Human, circulating, ex vivo isolated Naive CD4+ T cells and Naive Activated CD4+ T cells.
Human, circulating, ex vivo isolated Naive CD4+ T cells.
ONT sequencing
RNA-seq of chromatin RNA in human primary Naive CD4+ T cells.