Publications
2024
LINE1 modulate human T cell function by regulating protein synthesis during the life span.
Burattin FV, Vadalà R, Panepuccia M, Ranzani V, Crosti M, Colombo FA, Ruberti C, Erba E, Prati D, Nittoli T, Montini G, Ronchi A, Pugni L, Mosca F, Ricciardi S, Abrignani S, Pietrasanta C, Marasca F, Bodega B.
Sci Adv. 2024 Oct 11;10(41):eado2134. doi: 10.1126/sciadv.ado2134.
IRescue: uncertainty-aware quantification of transposable elements expression at single cell level.
Polimeni B, Marasca F, Ranzani V, Bodega B.
Nucleic Acids Res. 2024 Sep 13:gkae793. doi: 10.1093/nar/gkae793.
Early-onset cancers: Biological bases and clinical implications.
Mauri G, Patelli G, Sartore-Bianchi A, Abrignani S, Bodega B, Marsoni S, Costanzo V, Bachi A, Siena S, Bardelli A.
Cell Rep Med. 2024 Sep 17;5(9):101737. doi: 10.1016/j.xcrm.2024.101737.
A Versatile Pipeline for Analyzing Dynamic Changes in Nuclear Bodies in a Variety of Cell Types.
Di Gioia V, Zamporlini J, Vadalà R, Parmigiani E, Bodega B, Marasca F.
J Vis Exp. 2024 Jun 28;(208). doi: 10.3791/66874.
Genetic/epigenetic effects in NF1 microdeletion syndrome: beyond the haploinsufficiency, looking at the contribution of not deleted genes.
Tritto V, Bettinaglio P, Mangano E, Cesaretti C, Marasca F, Castronovo C, Bordoni R, Battaglia C, Saletti V, Ranzani V, Bodega B, Eoli M, Natacci F, Riva P.
Hum Genet. 2024 Jun;143(6):775-795. doi: 10.1007/s00439-024-02683-0.
2023
Transposable Elements Co-Option in Genome Evolution and Gene Regulation.
Gasparotto E, Burattin FV, Di Gioia V, Panepuccia M, Ranzani V, Marasca F, Bodega B.
Int J Mol Sci. 2023 Jan 30;24(3):2610. doi: 10.3390/ijms24032610.
2022
Evolution Increases Primates Brain Complexity Extending RbFOX1 Splicing Activity to LSD1 Modulation.
Forastieri C, Italia M, Toffolo E, Romito E, Bonasoni MP, Ranzani V, Bodega B, Rusconi F, Battaglioli E.
J Neurosci. 2022 May 4;42(18):3689-3703. doi: 10.1523/JNEUROSCI.1782-21.2022.
LINE1 are spliced in non-canonical transcript variants to regulate T cell quiescence and exhaustion.
Marasca F, Sinha S, Vadalà R, Polimeni B, Ranzani V, Paraboschi EM, Burattin FV, Ghilotti M, Crosti M, Negri ML, Campagnoli S, Notarbartolo S, Sartore-Bianchi A, Siena S, Prati D, Montini G, Viale G, Torre O, Harari S, Grifantini R, Soldà G, Biffo S, Abrignani S, Bodega B.
Nat Genet. 2022 Feb;54(2):180-193. doi: 10.1038/s41588-021-00989-7.
2021
Targeting HDAC8 to ameliorate skeletal muscle differentiation in Duchenne muscular dystrophy.
Spreafico M, Cafora M, Bragato C, Capitanio D, Marasca F, Bodega B, De Palma C, Mora M, Gelfi C, Marozzi A, Pistocchi A.
Pharmacol Res. 2021 Aug;170:105750. doi: 10.1016/j.phrs.2021.105750.
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski JA, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, Suzuki H, Nishiyori-Sueki H, Frith MC; FANTOM consortium; Chatelain C, Carninci P, de Hoon MJL, Wasserman WW, Bréhélin L, Lecellier CH.
Nat Commun. 2021 Jun 2;12(1):3297. doi: 10.1038/s41467-021-23143-7.
Early maternal care restores LINE-1 methylation and enhances neurodevelopment in preterm infants.
Fontana C, Marasca F, Provitera L, Mancinelli S, Pesenti N, Sinha S, Passera S, Abrignani S, Mosca F, Lodato S, Bodega B, Fumagalli M.
BMC Med. 2021 Feb 5;19(1):42. doi: 10.1186/s12916-020-01896-0.
An Algorithm for the Analysis of the 3D Spatial Organization of the Genome.
Gregoretti F, Cortesi A, Oliva G, Bodega B, Antonelli L.
Methods Mol Biol. 2021;2157:299-320. doi: 10.1007/978-1-0716-0664-3_17.
3D COMBO chrRNA-DNA-ImmunoFISH.
Marasca F, Cortesi A, Bodega B.
Methods Mol Biol. 2021;2157:281-297. doi: 10.1007/978-1-0716-0664-3_16.